Active site architecture and reaction mechanism determination of cold adapted β-d-galactosidase from Arthrobacter sp. 32cB

Artykuł - publikacja recenzowana


Tytuł
Active site architecture and reaction mechanism determination of cold adapted β-d-galactosidase from Arthrobacter sp. 32cB
Odpowiedzialność
Maria Rutkiewicz, Anna Bujacz, Marta Wanarska, Anna Wierzbicka-Wos, Hubert Cieslinski
Twórcy
Sumy twórców
5 autorów
Punktacja publikacji
Osoba Dysc. Pc k m P U Pu Opis
0000-0002-8416-5077 6.4 140 1 5 140,00 1,0000 140,0000 Art.
Gł. język publikacji
Angielski (English)
Data publikacji
2019
Objętość
17 (arkuszy wydawniczych), 17 (stron).
Identyfikator DOI
10.3390/ijms20174301
Adres URL
https://www.mdpi.com/1422-0067/20/17/4301/pdf
Adres URL
https://www.mdpi.com/1422-0067/20/17/4301 2019-09-17
Uwaga ogólna
JMS started to be published semi-monthly online since January 2019.
Uwaga ogólna
Received: 31 July 2019; Accepted: 30 August 2019; Published: 3 September 2019.
Uwaga ogólna
This article belongs to the Special Issue Carbohydrate-Active Enzymes: Structure, Activity and Reaction Products
Uwaga ogólna
This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
Finansowanie
This research was funded by National Science Centre of Poland 2016/21/B/ST5/00555 (A.B.)
Finansowanie
Scholarship (M.R.). 2018/28/T/ST5/00233
Cechy publikacji
  • Oryginalny artykuł naukowy
  • OpenAccess
Dane OpenAccess
CC_BY - Licencja,
FINAL_PUBLISHED - Wersja tekstu,
OPEN_JOURNAL - Sposób publikacji,
AT_PUBLICATION - Moment udostępnienia,
2019-09-03 - Data udostępnienia
Słowa kluczowe
Czasopismo
International Journal of Molecular Sciences
( ISSN 1422-0067 )
Kraj wydania: Szwajcaria (Schweiz)
Zeszyt: tom 20 zeszyt 17
Nr: 4301
Pobierz opis jako:
BibTeX, RIS
Data zgłoszenia do bazy Publi
2019-09-11
PBN
Wyświetl
WorkId
22452

Abstrakt

en

ArthbetaDG is a dimeric, cold-adapted beta-D-galactosidase that exhibits high hydrolytic\nand transglycosylation activity. A series of crystal structures of its wild form, as well as its ArthbetaDG_E441Q mutein complexes with ligands were obtained in order to describe the mode of its action. The ArthbetaDG_E441Q mutein is an inactive form of the enzyme designed to enable observation of enzyme interaction with its substrate. The resulting three-dimensional structures of complexes: ArthbetaDG_E441Q/LACs and ArthbetaDG/IPTG (ligand bound in shallow mode) and structures of complexes ArthbetaDG_E441Q/LACd, ArthbetaDG/ONPG (ligands bound in deep mode), and galactose ArthbetaDG/GAL and their analysis enabled structural characterization of the hydrolysis reaction mechanism. Furthermore, comparative analysis with mesophilic analogs revealed the most striking differences in catalysis mechanisms. The key role in substrate transfer from shallow to deep binding mode involves rotation of the F581 side chain. It is worth noting that the 10-aa loop restricting access to the active site in mesophilic GH2 betaDGs, in ArthbetaDG is moved outward. This facilitates access of substrate to active site. Such a permanent exposure of the entrance to the active site may be\na key factor for improved turnover rate of the cold adapted enzyme and thus a structural feature\nrelated to its cold adaptation.

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